字符串處理------Brute Force與KMP
阿新 • • 發佈:2018-03-08
else alt .com instead att i++ 記得 n! include
As an IBM researcher, you have been tasked with writing a program that will find commonalities amongst given snippets of DNA that can be correlated with individual survey information to identify new genetic markers.
A DNA base sequence is noted by listing the nitrogen bases in the order in which they are found in the molecule. There are four bases: adenine (A), thymine (T), guanine (G), and cytosine (C). A 6-base DNA sequence could be represented as TAGACC.
Given a set of DNA base sequences, determine the longest series of bases that occurs in all of the sequences.
Input to this problem will begin with a line containing a single integer n indicating the number of datasets. Each dataset consists of the following components:
一,字符串的簡單介紹
例:POJ1488 http://poj.org/problem?id=1488
題意:替換文本中的雙引號;
#include <iostream> #include <cstring> #include <cstdio> using namespace std; int main() { char c,flag=1; //freopen("Atext.in","r",stdin); while((c=getchar())!=EOF){ if(c==‘"‘){printf("%s",(flag? "``" : "‘‘"));flag=!flag;} else printf("%c",c); } return 0; }
二,模式匹配------Brute Force與KMP簡介
1,Brute Force算法
例:POJ3080 http://poj.org/problem?id=3080 枚舉,BF
新:strstr(str1,str2) 函數用於判斷字符串str2是否是str1的子串。如果是,則該函數返回str2在str1中首次出現的地址;否則,返回NULL。
Blue JeansDescription
The Genographic Project is a research partnership between IBM and The National Geographic Society that is analyzing DNA from hundreds of thousands of contributors to map how the Earth was populated.As an IBM researcher, you have been tasked with writing a program that will find commonalities amongst given snippets of DNA that can be correlated with individual survey information to identify new genetic markers.
A DNA base sequence is noted by listing the nitrogen bases in the order in which they are found in the molecule. There are four bases: adenine (A), thymine (T), guanine (G), and cytosine (C). A 6-base DNA sequence could be represented as TAGACC.
Given a set of DNA base sequences, determine the longest series of bases that occurs in all of the sequences.
Input
- A single positive integer m (2 <= m <= 10) indicating the number of base sequences in this dataset.
- m lines each containing a single base sequence consisting of 60 bases.
Output
For each dataset in the input, output the longest base subsequence common to all of the given base sequences. If the longest common subsequence is less than three bases in length, display the string "no significant commonalities" instead. If multiple subsequences of the same longest length exist, output only the subsequence that comes first in alphabetical order.Sample Input
3 2 GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3 GATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATACCAGATA GATACTAGATACTAGATACTAGATACTAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA GATACCAGATACCAGATACCAGATACCAAAGGAAAGGGAAAAGGGGAAAAAGGGGGAAAA 3 CATCATCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ACATCATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AACATCATCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Sample Output
no significant commonalities AGATAC CATCATCAT
Source
South Central USA 2006#include <iostream> #include <cstring> #include <cstdio> using namespace std; int main() { //freopen("Atext.in","r",stdin); int n,m,len; char ans[70],s[15][65],tmp[65]; cin >> n; while(n--){ cin >> m; int k=3,flag=0; //枚舉的字符串長度; ans[0]=‘\0‘,tmp[0]=‘\0‘,len=0; for(int i=0;i<m;i++) for(int j=0;j<60;j++) cin >> s[i][j]; while(k<=60){ //字符串起點 for(int i=0;i<=60-k;i++){ //枚舉長度為k的字符串的起點 memset(tmp,0,sizeof(tmp));//必須記得清空數組!! for(int j=i,t=0;j<i+k;j++)//這裏的i+k,原來敲的是k,傻了傻了,還找了半天!!! tmp[t++]=s[0][j]; for(int j=1;j<m;j++){ if(strstr(s[j],tmp)==NULL){flag=1;break;}//不是公共子串就標記跳出; } if(flag==0){ if(k>len){strcpy(ans,tmp);len=k;} else if(k==len&&strcmp(ans,tmp)>0){strcpy(ans,tmp);len=k;} } flag=0; } k++; } if(len!=0){ for(int i=0;i<len;i++) cout << ans[i] ; } else cout << "no significant commonalities" ; cout << endl; } return 0; }
2,KMP算法
例:POJ3461 Ouliop
例:POJ3461 Oulipo
#include <iostream> #include <cstdio> #include <cstring> const int maxn=10005; using namespace std; string s,t; int n,m; int nex[maxn]; void getnex(){ int j=0,k=-1; nex[0]=-1; while(j<n){ if(k==-1||t[j]==s[k]){ nex[++j]=++k; }else k=nex[k]; } } int kmp(){ int i=0,j=0,cnt=0; getnex(); while(i<m){ if(j==-1||s[i]==t[j]){ i++;j++; }else j=nex[j]; if(j==n) cnt++; } return cnt; } int main() { int c; //freopen("Atext.in","r",stdin); ios::sync_with_stdio(false); //加了這個,關閉了輸入輸出同步就過了,不然超時; cin >> c; while(c--){ int ans=0; cin >> t >> s; n=t.size(); m=s.size(); ans=kmp(); cout << ans << endl; } return 0; }
字符串處理------Brute Force與KMP