這裡給出 MATLAB_R2017a 的生物資訊學工具箱中 自帶的樣例 一覽：
如果是預設安裝，則相關目錄在：

C:\Program Files\MATLAB\R2017a\examples\bioinfo

按字母排序如下：

AlignMultipleSequencesExample.m
AlignQuerySequenceToProfileUsingHMMModelAlignmentExample.m
AUCNormalizationExample.m

BuildPhylogeneticTreefromPairwiseDistancesExample.m
BuildPhylogeneticTreeusingNeighborJoiningMethodExample.m

CalculateAffymetrixProbeAffinitiesExample.m
CalculateMaximumFlowExample.m
CalculateRangeOfGeneExpressionProfilesExample.m
CalculateSequenceProfilefromPartofAlignmentCountingAllGaExa
CalculateTheAtomicCompositionOfAProteinExample.m
CalculateVarianceOfGeneExpressionProfilesExample.m
ChangeReferenceSequenceOfBioMapObjectExample.m
CharacterizeGenesInvolvedInTheYeastDiauxicShiftExample.m
CleaveASequenceExample.m
ComputeTheNumberOfReadsMappedToRefSeqExample.m
ConstructABioIndexedFileObjectAndAccessItsGOExample.m
ConstructABioMapObjectExample.m
ConstructAnExptDataObjectExample.m
ConstructBioReadObjectfromFASTQFileExample.m
ConstructBioReadObjectfromMATLABStructureExample.m
ConstructBioReadObjectfromMATLABWorkspaceVariablesExample.m
ConvertADNASequenceToAnRNASequenceExample.m
ConvertAlignedSequencesToCIGARStringsExample.m
ConvertAnAminoAcideSequenceToANucleotideSequenceExample.m
ConvertAnAminoAcidSequenceToSingleletterOrThreeletterExampl
ConvertANucleotideSequenceToItsComplementarySequenceExample
ConvertARandomAminoAcidSequenceExample.m
CountAminoAcidsInASequenceExample.m
CountCodonsInANucleotideSequenceExample.m
CountCodonsInNucleotideSeqExample.m
CountDimersInANucleotideSequenceExample.m
CountNucleotidesInASequenceExample.m
CountTheNumberOfReadsMappedToGenomicFeaturesExample.m
CreateABiographObjectAndCalculateNodePositionExample.m
CreateABiographObjectExample.m
CreateABioMapObjectDisplayInNGSBrowserExample.m
CreateAPhylogeneticTreeExample.m
CreateBiographObjSpecifyAccessItsPropsExample.m
CreatePCAPlotOfMicroarrayDataExample.m
CreateQualityControlPlotsForSequenceAndQualityDataExample.m

DetermineImportantFeaturesFromFisherIrisDataExample.m
DisplayASequenceLogoForAlignedAASeqExample.m
DisplayBoxPlotsForMicroarrayDataExample.m
DisplayCNVDataAlginedToChromosomeIdeogramExample.m
DisplaySequenceLogoForNucleotideSeqExample.m
DisplayTheFrequencyOfCNAExample.m

EstimateSynonymousAndNonsynonymousSubRatesExample.m
EstimateSynonymousAndNonsynonymousSubRatesMLExample.m

FilterNextgenerationSequencingDataExample.m
FilterOutGeneswithLowAbsoluteExpressionLevelsExample.m

GenerateAnIndexStructFromBAMFileExample.m
GenerateSpatialImageForMicroarrayDataExample.m

MaximumIntensityNormalizationExample.m

NormalizeAffymetrixDataExample.m
NormalizeMicroarrayDataExample.m

OpenAndViewABiologicalSequenceExample.m

PerformCBSOnCGHDataExample.m
PerformHierarchicalClusteringOnGeneExpressionDataExample.m
PerformUnpairedHypothesisTestForShortreadCountDataExample.m
PlotAHeatmapOfDataMatrixExample.m
PlotASetOfMassSpectraDataExample.m
PlotChromosomeIdeogramsExample.m

QuantileNormalizationExample.m

ReadCytogeneticBandingInformationFromAFileExample.m
ReadDataFromGPRFileExample.m
ReadSequenceDataFromFASTAFilesExample.m
ReadSequenceInformationFromEMBLFileExample.m
ResampleMassSpectrometryDataExample.m
RetrieveAlignmentRecordsThatAlignToTwoRefSeqExample.m
RetrieveBLOSUMScoringMatrixExample.m
RetrieveExonsFromAGTFformattedFileExample.m
RetrieveGenesFromAGTFformattedFileExample.m
RetrieveInfoAboutBAMFileExample.m
RetrieveSegmentsFromAGTFformattedFileExample.m
RetrieveTranscriptsFromAGTFformattedFileExample.m

SendRasMolScriptCommandsToMoleculeViewerAppExample.m
SmoothMassSpectrometryDataExample.m
SplitMergedPairedendSequencesIntoSeparateFilesExample.m
SplitSequencesIntoSeparateFilesBasedOnBarcodesExample.m

TrimSequencesInAFASTQFileExample.m

UpdateSAMFlagValuesOfBioMapObjectExample.m

View3DStructureOfAMoleculeExample.m
ViewAMultipleSequenceAlignmentFileExample.m
ViewAPhylogeneticTreeExample.m

將在 MATLAB生物資訊分析工具箱（二） 中簡要地介紹每一個檔案的用途。