常用生信分析軟體 阿新 • • 發佈:2018-11-02 官網 原始碼 安裝&使用 BWA http://bio-bwa.sourceforge.net/ https://sourceforge.net/projects/bio-bwa/files/ http://www.cnblogs.com/leezx/p/5601525.html http://cncbi.github.io/BWA-Manual-CN/ Minimap2 https://lh3.github.io/minimap2/ https://github.com/lh3/minimap2 https://github.com/lh3/minimap2/blob/master/README.md Samtools http://www.htslib.org/ https://github.com/samtools/samtools http://www.htslib.org/download/ http://www.htslib.org/doc/samtools.html https://davetang.org/wiki/tiki-index.php?page=SAMTools Picard http://broadinstitute.github.io/picard/ https://github.com/broadinstitute/picard http://broadinstitute.github.io/picard/ http://broadinstitute.github.io/picard/command-line-overview.html GATK 3.8 https://software.broadinstitute.org/gatk/ https://github.com/broadgsa/gatk-protected https://software.broadinstitute.org/gatk/documentation/quickstart?v=3 GATK 4.0 https://software.broadinstitute.org/gatk/ https://github.com/broadinstitute/gatk https://github.com/broadinstitute/gatk Biobambam2 https://github.com/gt1/biobambam2 https://github.com/gt1/biobambam2 https://github.com/gt1/biobambam2 vcftools https://vcftools.github.io/index.html https://github.com/vcftools/vcftools https://vcftools.github.io/documentation.html https://vcftools.github.io/man_latest.html SOAPdenovo2 ftp://public.genomics.org.cn/BGI/SOAPdenovo2 http://soap.genomics.org.cn/soapdenovo.html https://github.com/aquaskyline/SOAPdenovo2 http://soap.genomics.org.cn/soapdenovo.html